rs29902480 SNP Detail

Summary

• ID
  rs29902480
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34286632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTCAGTG TGGGGAGGGA
  TGACTCTCAT TCGGCAGCAG AGAGTCCTGA AATCTTGCAA TGTCTAAATG AAGTCAGTAC
  ATGAGTTCGT TAGCTTTTGA AGAATTGCTT CCAAAGGTCT TAATCATGTC TGACTATTAG
  GGGTTCTGTA CCAACTTTGT TACCAAAGAA AAGCTCTACC AGGAAGGACG GTCTTCAAAA
  S
  CTCCCAGCAA GCACTTCCAG CAAGCGCTCA GCCGTAGCCA GGGACAGGGA AGGGAAAGCA
  TGGCAGAAAG GACTAACTGA TTGCTTCCAT TGAGAGGAAG CTTCAGTGTT GGAGCTAGAA
  TTGAGTTTGT GTTGTCTCAC CAGACCCCAG CAAATCCATT TCCGAGCATG GCTTCACAAG
  GAAAGCCCGG AAACCATTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577676	NES12874721	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29902480					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577676	NES12874721	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34286632 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	121 bp distal
Rr575113	regulatory region 575113	408 bp distal