rs29902474 SNP Detail

Summary

• ID
  rs29902474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34287381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTTCCTG TGACTAAAGT
  TCTTGAGCCC AAAATAGAAC CCCATCTCCT GACTCACTTC TGAGTTCTCA TGCCCGAGAA
  CATGTTGCCT AAAATAAGGT TGATTCTTGG CTTCTGGAAA TATGGATTTT TATTTATTTT
  ATTTTATTAG TAATGCTTCC AGAGTCTCCT AAGCCCTGAC TCTATACCTG CACCATACCC
  R
  GGTCTTCACA TTGCTCCTCT ACCTATGAGG TGAAACAGTC TTTCATTATA AGAACACAGG
  CTCACATTCA GAGCTCTCTG CATGGGGTAC TGAGGTACTG AGCCTGCATG GGGTACTGAG
  GTACTGAGCC TGCATGGGGT ACTGAGGTAC TGAGCCTGCA TGAGGTACTG AGGTACTGAG
  CCTGCATGGG GTACTGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577670	NES12874728	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29902474					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577670	NES12874728	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34287381 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	870 bp distal
Rr575113	regulatory region 575113	1157 bp distal