rs29902191 SNP Detail

Summary

• ID
  rs29902191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33972892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGCTGC TTAAGGCAGG
  TGAGATGGTG TACTTCTAAA GTCTCACCAC TTGGAAGGTA GAGGCAGAGG AGCAAAGGTC
  ATCCTTAGCG ACAGTGAGTT TGATGTTAGC CTAGACTACA TGAGACCCAA TTCCAAAAAA
  AAAAAAAAAA AATACTATGT CTTTTTAAAC TTAAGATTTC ATAGCAGTTA TTATTTTGCT
  R
  TAACATTATC AAAAAGCCGA TTGAATTCAA AGCAGTTTCA ACTAGAAAAC TCAGCTCAGC
  TCCCCATTTA GAATCAAACA CAAAAACTCC TTTTAGAGAT GGCTGTAAAT ATTTGTTAGT
  TTACTGATGA GATGGGAAAG GAGCAGAGGA GCGAAGAGAC TGGAAGAGAA TTTGGGCAGG
  CAGGTTCCCG AGGACTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45427652	mCV24296011	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss49579099	NES12880007	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		A	A	A		A	G	A	A
ss134760336	ENSMUSSNP2784453	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29902191					SNP	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579099	NES12880007	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33972892 () rs orientation: forward

Symbol	Name	Function Class
Rr575083	regulatory region 575083	235 bp distal
Rr575084	regulatory region 575084	96 bp proximal
Rr575085	regulatory region 575085	212 bp proximal