rs29901632 SNP Detail

Summary

• ID
  rs29901632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34287454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGAACAT GTTGCCTAAA
  ATAAGGTTGA TTCTTGGCTT CTGGAAATAT GGATTTTTAT TTATTTTATT TTATTAGTAA
  TGCTTCCAGA GTCTCCTAAG CCCTGACTCT ATACCTGCAC CATACCCAGG TCTTCACATT
  GCTCCTCTAC CTATGAGGTG AAACAGTCTT TCATTATAAG AACACAGGCT CACATTCAGA
  R
  CTCTCTGCAT GGGGTACTGA GGTACTGAGC CTGCATGGGG TACTGAGGTA CTGAGCCTGC
  ATGGGGTACT GAGGTACTGA GCCTGCATGA GGTACTGAGG TACTGAGCCT GCATGGGGTA
  CTGAGGTACT GAGCCTGCAT GGGGTACTGA GGTACTGAGC CTGCATGAGG TACTGAGGTA
  CTGAGCCTGC ATGGGGTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49577668	NES12874731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29901632					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577668	NES12874731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34287454 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	943 bp distal
Rr575113	regulatory region 575113	1230 bp distal