rs29901272 SNP Detail

Summary

• ID
  rs29901272
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33973629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAATGGA GAAAGACAGG
  GATGGGGGTG GGTGGTACCA AGTAACAGAG CTGCCTTCAT TTGAAGCTAC AGTGGCTATT
  TGCAACATCC TGAAACAGTC TGCACCTAGA GGGCGAAGAA AGCCCCCTAC GTTCACTACG
  TGAGCTGAAG ATAACATAAA GATTGTTTGA ATCTGTCTTG TTGTAACAAA AATTCTTGTT
  K
  TTCGGTCAGA AGATACCACT GATTCGTAAA GAACCCAGGA AAGCTTAATA GCAACAACAA
  CAAAAAAAAT GCTACTTGCC ATCATAATTC TGAGAAAATA TCTTCACCCA CACAGTCCAA
  AAATGAGAAC CGACAGAGCC AGTCTGGGGC AGATCCTGGA GCAGGGACCA TGCAGAACTG
  TGTGACCATG ATGACGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49579090	NES12880015	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29901272					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579090	NES12880015	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33973629 () rs orientation: forward

Symbol	Name	Function Class
Rr575083	regulatory region 575083	972 bp distal
Rr575084	regulatory region 575084	247 bp distal
Rr575085	regulatory region 575085	504 bp distal