rs29899140 SNP Detail

Summary

• ID
  rs29899140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34072036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTAATTTCA GTAGGAGTCT GTACATCTCC TCCAGCAGGA
  GGAAGTCAAA GTCAGTTGTC TTTTCACATA CTGATCGGTA ACGAAAATTC TGCCATTCCT
  Y
  TTGAGCCTGG CCCATATGGG TAAGCTTTGC CAAATTGTAC CATGGGTCTG AGGCCTCACA
  GTCATTGGCA AGGTGTGTCA ACAGTACACA TCTGTTCACG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49578757	NES12875268	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29899140					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578757	NES12875268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34072036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	1567 bp proximal
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	1381 bp proximal
Rr575096	regulatory region 575096	1901 bp proximal
Tssr28785	transcription start site region 28785	1982 bp upstream
Tssr32968	transcription start site region 32968	1910 bp downstream