rs29899139 SNP Detail

Summary

• ID
  rs29899139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34072066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCTGCT ACCTTTGCAA
  CCTAGAACTC AGCATGTTTA TTCCTAGGTA CAACACAGTG GGAGGGGCTA GCTAATTTCA
  GTAGGAGTCT GTACATCTCC TCCAGCAGGA GGAAGTCAAA GTCAGTTGTC TTTTCACATA
  CTGATCGGTA ACGAAAATTC TGCCATTCCT CTTGAGCCTG GCCCATATGG GTAAGCTTTG
  Y
  CAAATTGTAC CATGGGTCTG AGGCCTCACA GTCATTGGCA AGGTGTGTCA ACAGTACACA
  TCTGTTCACG AAGGTCTGTG CCCACACGTG AATCTGGTAG TCTTGGAGAT CAGAAGAGGG
  TGTTGGCTAT CCTGGAAATG GAGTTATATA CAGTTATGAG TTGCCATGCA GCTGAGAATC
  AAGGACACAT GCTGAGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49578756	NES12875269	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29899139					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578756	NES12875269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34072066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	1537 bp proximal
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	1351 bp proximal
Rr575096	regulatory region 575096	1871 bp proximal
Tssr28785	transcription start site region 28785	1952 bp upstream
Tssr28786	transcription start site region 28786	1984 bp upstream
Tssr28787	transcription start site region 28787	2000 bp upstream
Tssr32968	transcription start site region 32968	1880 bp downstream