rs29899138 SNP Detail

Summary

• ID
  rs29899138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34072637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAACAG CTAAAAGAGA
  ATTTGACTCA GCTAACAGTG GAGTTTTTTG TTTGTTTGTT TTGAGACAGG GTCTCACATA
  GCTAGACTGA CCTGGAACTT GTAGCTGAGG ATAACCTTGG ACTCCTGATC CTCTTGTATT
  CTCCACAAAA TTACAGGCAT GGGCCTTCAA ATGAGAAATA AATAAAGGGC TAAAGAAGAT
  R
  GTGCTGTGTG TAGCTCCGGG ACCTTGTTTC AGTCCTCTGC ATCTGACCCT CAAACATACT
  AATAAACCCA TATCAGCAGT ACAGTGCGGT TGCTTATGCA GTGTAATACT GTGACAAAAA
  ATGGACACCT AGTCATACCT GCTGTACCAT GAATCTTGAA AGAATATTCT AAATGAGAGA
  AGCCAATCAC AGAAGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49578755	NES12875149	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29899138					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578755	NES12875149	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34072637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	966 bp proximal
Fxr1	FMR1 autosomal homolog 1	1496 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	780 bp proximal
Rr575096	regulatory region 575096	1300 bp proximal
Rr575097	regulatory region 575097	1631 bp proximal
Tssr28785	transcription start site region 28785	1381 bp upstream
Tssr28786	transcription start site region 28786	1413 bp upstream
Tssr28787	transcription start site region 28787	1429 bp upstream
Tssr28788	transcription start site region 28788	1444 bp upstream
Tssr28789	transcription start site region 28789	1459 bp upstream
Tssr28790	transcription start site region 28790	1587 bp upstream
Tssr28791	transcription start site region 28791	1595 bp upstream
Tssr32968	transcription start site region 32968	1309 bp downstream