rs29899136 SNP Detail

Summary

• ID
  rs29899136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34072681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACC TTGTTTCAGT CCTCTGCATC
  Y
  GACCCTCAAA CATACTAATA AACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45525321	mCV22842353	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss49578753	NES12875151	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C		C	C	C	C		C	C	C	C		C
ss134762053	ENSMUSSNP3339319	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320700961	CHEV_3_33917454	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29899136					SNP	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578753	NES12875151	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34072681 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	922 bp proximal
Fxr1	FMR1 autosomal homolog 1	1452 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	736 bp proximal
Rr575096	regulatory region 575096	1256 bp proximal
Rr575097	regulatory region 575097	1587 bp proximal
Tssr28785	transcription start site region 28785	1337 bp upstream
Tssr28786	transcription start site region 28786	1369 bp upstream
Tssr28787	transcription start site region 28787	1385 bp upstream
Tssr28788	transcription start site region 28788	1400 bp upstream
Tssr28789	transcription start site region 28789	1415 bp upstream
Tssr28790	transcription start site region 28790	1543 bp upstream
Tssr28791	transcription start site region 28791	1551 bp upstream
Tssr32968	transcription start site region 32968	1265 bp downstream