rs29899135 SNP Detail

Summary

• ID
  rs29899135
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34073048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTCATA TGTGAGATCG
  AGCTAGGCAA ATCTCTACAT AGAAAACACA TGGGCAGTTT CCTAGAATCC AGGGAATTCA
  GGAGAATTGG GGAACAGCAA CAAGCACAAG TGCTTTTTAT TTTTACTTAT TTATTGTTGT
  TTGTGATGAA AATGTTTTAT ACTGATCCTG GTGATAGACG CTGAACTGTA CATTTTTAAA
  W
  GGGCTAATCT TGTATAAAGA AAATGTACTT TATACAAACC AGGTTGCTAG GGGCCAGGAG
  CTCACACCAG TAAAGCCAGC ACTCTGGAGG CTAAGACAAG AGAATGGGAG GTAAATCGAA
  GGCCATCTTG GACTGCTTAG TGAGACTTGT CTCAGAGTAA CAGGTAACCG TGGGGGAACT
  GAGCCTGTTA GCCCAACTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49578752	NES12875115	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29899135					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578752	NES12875115	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34073048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	555 bp proximal
Fxr1	FMR1 autosomal homolog 1	1085 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	369 bp proximal
Rr575096	regulatory region 575096	889 bp proximal
Rr575097	regulatory region 575097	1220 bp proximal
Tssr28785	transcription start site region 28785	970 bp upstream
Tssr28786	transcription start site region 28786	1002 bp upstream
Tssr28787	transcription start site region 28787	1018 bp upstream
Tssr28788	transcription start site region 28788	1033 bp upstream
Tssr28789	transcription start site region 28789	1048 bp upstream
Tssr28790	transcription start site region 28790	1176 bp upstream
Tssr28791	transcription start site region 28791	1184 bp upstream
Tssr32968	transcription start site region 32968	898 bp downstream