rs29890542 SNP Detail

Summary

• ID
  rs29890542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52713309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTTCTG ACTTCCAGCC
  TGATCAAGAA GAAAACTCCT TAAGCTCAAG GGAAGGACCA TGCTTCAAAA GGAAAAAAGT
  TGTAGAATGA TAGGGGAAGG CTTGATGCTT GCACACCCTA TACATACATG TGTGCATATT
  TTCACATGGA CATATGATAT ACTCACAAAA ACACAAAAGG TTGAGTATAT GAAAGTTTAA
  M
  TGTTAGAATT TCAGGCTTAT TTTATAGTCT TGGTTTATAC AATTTGAGAT AATAAATATG
  GGATTGAAAT GATAAGAAAT CAGAGACAAA TGTAGTGGTA ATGCGTATAT TCTTGGTACC
  CAAAAGATAG GAGACCCCTT TTAAGGCTGG GCAATAGTGG CACCTGCATT CAATCTCAGC
  ACTCAGGAGG CAGAGGCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47890352	NES11669601	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29890542					SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47890352	NES11669601	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52713309 () rs orientation: forward

Symbol	Name	Function Class
Rr630474	regulatory region 630474	958 bp distal
Tax1bp1	Tax1 (human T cell leukemia virus type I) binding protein 1	Intron
Tssr56539	transcription start site region 56539	753 bp upstream