rs29890538 SNP Detail

Summary

• ID
  rs29890538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52711894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCATTAG TGCAGTGTTT
  CTTAATTTCT TCCACCCTCC TTCATTTGTC TTCCATCTTG TTCCTTTAAG ATAGGGTCTT
  GCTTATGTAA ACCAGGCTGA TATCAGGCTT GCTTATCTTC TTACGTAGTC TCCTGAGTGT
  TGGCCATTGG AGATATGTCC TATCATACTC AGCTTTTAGA AAATGAAATA GTTTGACTTA
  Y
  CAGTTCTTTT GGCATATAGT TTTCCATAAC AGCACCTTTG TATACCTTAT TATACTTTAG
  CCAAAGTTTT ATTAATTAGC TAGGAGAGAA ACTTAGCGGG GACCTTGATC AAGCTTTCAT
  AAGCTACTAG ATGCTTGTCA TAATTTATGG GATGAAGATA TTTTAAGCTT TAAAGTATCT
  GTGTAAAGAA GGTTCTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47890348	NES11669648	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29890538					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47890348	NES11669648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52711894 () rs orientation: forward

Symbol	Name	Function Class
Rr630474	regulatory region 630474	436 bp proximal
Tax1bp1	Tax1 (human T cell leukemia virus type I) binding protein 1	Intron
Tssr56538	transcription start site region 56538	1710 bp downstream