rs29889822 SNP Detail

Summary

• ID
  rs29889822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34046902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA ATTTATTTTC ACTCTCTTTT
  R
  GAAACTAAAT AGAATGACTC TGTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45410663	mCV22841582	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss49578838	NES12876995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G		G	G	G	G		G	G	G	G		G
ss134761869	ENSMUSSNP6919105	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320700903	CHEV_3_33891675	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29889822					SNP	G	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578838	NES12876995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34046902 () rs orientation: forward

Symbol	Name	Function Class
Gm43077	predicted gene 43077	within coordinates
Gm64430	predicted gene, 64430	within coordinates
Rr374799	regulatory region 374799	623 bp downstream
Rr575091	regulatory region 575091	807 bp proximal
Rr575092	regulatory region 575092	1004 bp proximal