rs29889820 SNP Detail

Summary

• ID
  rs29889820
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34047121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTTTT GGGCAGTGAG
  TTTAAGTTAT CTATCTGCTT TCAAAACTGG CAAGACATTT GTTAAAAATC TAGAACAAAG
  AGCAGTGATT TGAGGCTAAT CTGTGTGTCA GACTAAACAC AAAATGAGCC AAGATGAACT
  CCAAAATAAT TGCTATTTTC CAATTTTTCA AAGTCATAAA TGTGTGATTA ATATACTCTC
  W
  TATAGAATAT TCTAAAAATT CCAAAGTACA CACACACACA CACACACACA CACAGAGTTA
  TACAACATTA GATTTTTACA GGAGCAATCT CTTGCGAACA TAGTTTTCTA TGACTTGTGC
  TCTAAGCTAA TAATTTGTTC AGAGAAATTC CCAAGGCAAT GAACAGAGCT CATTTGAACA
  ACTACAAAAT ATTCAATAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49578836	NES12877000	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29889820					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578836	NES12877000	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34047121 () rs orientation: forward

Symbol	Name	Function Class
Gm43077	predicted gene 43077	within coordinates
Gm64430	predicted gene, 64430	within coordinates
Rr374799	regulatory region 374799	842 bp downstream
Rr575091	regulatory region 575091	588 bp proximal
Rr575092	regulatory region 575092	785 bp proximal