rs29889817 SNP Detail

Summary

• ID
  rs29889817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34047592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTTTAT ACAAAACAGT
  ACAACAAATA ATGGATGCTC CTAGAGTCAC GCTTCGTCTG TTTAGCCAAA ATGTCCTCAA
  ACTCACAGTT CTCCTGCAGT AGCCCCTGTG CAACAACAAC AACAACAACA ACTGTGTATT
  GGTAAGGCAA CAACATATGT TAGCTGGTAC TGTATATCTG CTTGCTTTCA GGAGAGCTAT
  R
  ATTGCAGACA CCACCTCTGA GCCTGCACAG CATTCTGTGC ACAGATAGCA CCCACAATCC
  TCAGAACGCA GCTCAGAGTA GCGGGCCTAG CTCCTGTGTC CCGGTTGCGA GCTGACTCTG
  GGAGCAGTTT CTCCATCCTA CTCTACTTCA CTCTTACCCC AGCTCTCTCC CTCCCGCACT
  TGTACGTTCC AGTGGTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49578833	NES12877005	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29889817					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578833	NES12877005	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34047592 () rs orientation: forward

Symbol	Name	Function Class
Gm43077	predicted gene 43077	within coordinates
Gm64430	predicted gene, 64430	within coordinates
Rr374799	regulatory region 374799	1313 bp downstream
Rr575091	regulatory region 575091	117 bp proximal
Rr575092	regulatory region 575092	314 bp proximal