rs29888923 SNP Detail

Summary

• ID
  rs29888923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34047823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA CACACCTCTC CAACCTTGGC
  K
  CCTCTGCACT CAGGTCTGGG ATGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45414253	mCV22841768	ABI	CRAMUS_MOUSE	f	SNP		G						T		G
ss49578829	NES12877018	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	T	G	G		T	G	G	G		T	G	G	T		G
ss134761881	ENSMUSSNP3749267	ENSEMBL	ENSEMBL_Sanger	f	SNP										G
ss320700907	CHEV_3_33892596	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29888923					SNP	G	G	G	G	T	G	G	T	T	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49578829	NES12877018	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34047823 () rs orientation: forward

Symbol	Name	Function Class
Gm43077	predicted gene 43077	within coordinates
Gm64430	predicted gene, 64430	within coordinates
Rr374799	regulatory region 374799	1544 bp downstream
Rr575091	regulatory region 575091	within coordinates
Rr575092	regulatory region 575092	83 bp proximal