rs29888167 SNP Detail

Summary

• ID
  rs29888167
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33971236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGTGGCC ATCTTGTGAT
  TTTTATTTTG CATACTCAAA GTGAGAATCA AATTGTGAGC AAACCCCATA GTACTTTATC
  TAGAAAAAAA TAAGTCGTTG AAAAATGTCC TGTGGGTGAT AAGTCCTACC TTCTTATCGC
  TGCTCCACAG GAGAAAGGCT TTCATGCTTT TTGATCCTGT GGAGGAGTGA GTATTTAACA
  R
  AACATCTGAG GAGCTGGGAT GTTACTTGTT TTCTCATTTC ACAGAAAAAG AACCAGGAAG
  AGCCCTCTAT TGCGAGATGC TTTGGTAGCC CACGTCGGGG AGCACCAATT CTTGGAAGAG
  TCCAGGGGCC CTGGAAAGAA AGAACAGAAC AGAGAGGATC CATTGCTGAC TAGAGTAGAG
  GAACAGAGTC CTGGGATAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49579113	NES12880089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29888167					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579113	NES12880089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33971236 () rs orientation: forward

Symbol	Name	Function Class
Rr575082	regulatory region 575082	1120 bp distal
Rr575083	regulatory region 575083	1400 bp proximal
Rr575084	regulatory region 575084	1752 bp proximal
Rr575085	regulatory region 575085	1868 bp proximal