rs29888164 SNP Detail

Summary

• ID
  rs29888164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33971412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGAGGA GTGAGTATTT
  AACAGAACAT CTGAGGAGCT GGGATGTTAC TTGTTTTCTC ATTTCACAGA AAAAGAACCA
  GGAAGAGCCC TCTATTGCGA GATGCTTTGG TAGCCCACGT CGGGGAGCAC CAATTCTTGG
  AAGAGTCCAG GGGCCCTGGA AAGAAAGAAC AGAACAGAGA GGATCCATTG CTGACTAGAG
  K
  AGAGGAACAG AGTCCTGGGA TAGGAAATGG TTCTTGAAGA CATTTGGGTG TTGTTGTTGT
  TGTTGTTTTC TGGAAAAAGT CTGAGTTTTT GTGAAAGACA CATTTTTCTC ATTCAACAAG
  CAAACATCTT CAGAGATTTG GCTAGACTAG CCCTCCTTGC CTCAGACAGT CAACTGATGA
  GCTACCCTGC CAATATCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49579110	NES12880092	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	T	T	T	T	G	T	G	G	T
ss134760294	ENSMUSSNP862961	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29888164					SNP	G	G	T	T	T	G	T	T	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49579110	NES12880092	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33971412 () rs orientation: forward

Symbol	Name	Function Class
Rr575082	regulatory region 575082	1296 bp distal
Rr575083	regulatory region 575083	1224 bp proximal
Rr575084	regulatory region 575084	1576 bp proximal
Rr575085	regulatory region 575085	1692 bp proximal