rs29886550 SNP Detail

Summary

• ID
  rs29886550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110563565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATTGTC ATATGCAATC
  ATTTGACTTT AAGGAGAACC TAGAATGTCT CAGGAATTGT GAGGCATCAC ACCTGGAGCA
  AAACAAAAGT AAAGTTCTGG GTTTCACCAA GTTCAGAAGA CTCCAAGATG TATAAAATGT
  GTCACACTCC TTTAGTTGTT GTTTTATCAG CTTCTTGTGC TGCCTTTTCT CCTCTTCTGC
  Y
  AGCTCTTCCA TAACGTTGAT GACTCTAGAC CTCTCTGTAT CTTTCATATG CTCAAGATAA
  GTCTTCTATG TTGTTTTCCA TTCCATTTTT TATTTTAGTT TCTGTAAATG TAAAAAAGGG
  ATGGGGCTTA TGACAGAGCC AAGTAAAGTA CTGTAAGGGT GTAAGAGTTG GAAGTGGTCA
  AAGAAAATAT TGTGCCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891121	NES10709997	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29886550					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891121	NES10709997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110563565 () rs orientation: forward

Symbol	Name	Function Class
Rr583481	regulatory region 583481	1254 bp proximal