rs29886547 SNP Detail

Summary

• ID
  rs29886547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110563534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATCTATT TATCTAAAAT
  AAAAAAAAAT CCTTCATTGT CATATGCAAT CATTTGACTT TAAGGAGAAC CTAGAATGTC
  TCAGGAATTG TGAGGCATCA CACCTGGAGC AAAACAAAAG TAAAGTTCTG GGTTTCACCA
  AGTTCAGAAG ACTCCAAGAT GTATAAAATG TGTCACACTC CTTTAGTTGT TGTTTTATCA
  R
  CTTCTTGTGC TGCCTTTTCT CCTCTTCTGC CAGCTCTTCC ATAACGTTGA TGACTCTAGA
  CCTCTCTGTA TCTTTCATAT GCTCAAGATA AGTCTTCTAT GTTGTTTTCC ATTCCATTTT
  TTATTTTAGT TTCTGTAAAT GTAAAAAAGG GATGGGGCTT ATGACAGAGC CAAGTAAAGT
  ACTGTAAGGG TGTAAGAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46891118	NES10709994	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29886547					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891118	NES10709994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110563534 () rs orientation: forward

Symbol	Name	Function Class
Rr583481	regulatory region 583481	1285 bp proximal