rs29882678 SNP Detail

Summary

• ID
  rs29882678
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115492995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGCACCT GCATGCCTGT
  ATGCATGTGA TATGTGTAAG TAACAGAACA GTTTGCAGGA GCTGGTTCTG TCCCCGCACC
  GTGTGAGTCC CAGGTATCAA GCTCGAAGGT GCGGCTTGAC GGGAAGCATC CTTGCCTCCT
  GAGCTAGCTC ACCAGCTCCA TTTACATTTC AAAATGGAAA GTCATCATTC TACTTTAAGA
  K
  ATAGAGTATT TTGACTTGAA TACAAAATAC TTACAAAATG ATAGATAATT GCTACAAAAG
  TTATATTACA TGCTAATAAA GCCATTCCTA TGCTTCTGTC AGAGATAAAC ACTACCCTTT
  AGCCAGTACA CATGCTTAGA TGTTTTCAAT ACCTCTCTAA GATACATTGT ATTATATTGC
  TCCTTATTCT TTTTCTCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45373651	mCV23365491	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	G	G
ss147265785	ENSMUSSNP1800303	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29882678					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115492995 () rs orientation: forward

Symbol	Name	Function Class
Cdin1	CDAN1 interacting nuclease 1	Intron
Rr562938	regulatory region 562938	1356 bp distal