rs29880782 SNP Detail

Summary

• ID
  rs29880782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119448586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TGGGCAGTAC TGTCCCCCAT
  Y
  CCTCATCTGC CTCTGGTCTA TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45373554	mCV22553824	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147337121	ENSMUSSNP6653769	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320476337	CHEV_2_119443841	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29880782					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119448586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12123	CpG island 12123	within coordinates
Nusap1	nucleolar and spindle associated protein 1	619 bp upstream
Oip5	Opa interacting protein 5	Intron
Rr397233	regulatory region 397233	350 bp upstream
Rr563550	regulatory region 563550	within coordinates
Rr563551	regulatory region 563551	183 bp proximal
Rr563552	regulatory region 563552	354 bp proximal
Rr563553	regulatory region 563553	1857 bp proximal
Tssr19645	transcription start site region 19645	616 bp upstream
Tssr25824	transcription start site region 25824	350 bp downstream