rs29880159 SNP Detail

Summary

• ID
  rs29880159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTACACAAA TTGGGATGGA AGAATGGAGC TCAGGTTTAT
  TTATTTATTT ATTTATTTAT TCACTGATCG CAGCCACACA CCCCTACAAT TTTTTAAACA
  Y
  GCGTGTGTAT AGGATGTACA TGTGACACAG CACTGATATG GACATCAGAG GACAACCTGA
  AGAAGTTGTC TCTTCCCTGT GTGGATTCTG GAGATAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46350413	mCV23074683	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss136828268	ENSMUSSNP4893507	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss323100054	CHEV_9_95309517	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29880159					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291151 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1828 bp upstream
Gm8449	predicted gene 8449	1571 bp downstream
Gm35915	predicted gene, 35915	544 bp downstream
Gm37805	predicted gene, 37805	530 bp downstream
Rr684790	regulatory region 684790	1733 bp distal
Rr684791	regulatory region 684791	814 bp distal
Tssr86547	transcription start site region 86547	1659 bp downstream
Tssr90904	transcription start site region 90904	1979 bp upstream
Tssr90905	transcription start site region 90905	1907 bp upstream
Tssr90906	transcription start site region 90906	1886 bp upstream
Tssr90907	transcription start site region 90907	1859 bp upstream
Tssr90908	transcription start site region 90908	1822 bp upstream
Tssr90909	transcription start site region 90909	1799 bp upstream
Tssr90910	transcription start site region 90910	1765 bp upstream
Tssr90911	transcription start site region 90911	1737 bp upstream
Tssr90912	transcription start site region 90912	1319 bp upstream