rs29879623 SNP Detail

Summary

• ID
  rs29879623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108713003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTTTTT TTTTAAATAG AGAAATCCAT GTAGCCCAGG
  CAGGCCTCTA ACTCACTCTG TATGCATAAA TGATTTTGAA TTTCTGATTT CCTGCATCTG
  Y
  CTGCAGTATT GTATTACAGA CATGAGCCAC CCAGATGCTT TTTAAGCGGT GCTAGGAGTT
  CAGGCTGATT CTGACATGCT AGGTAAGCAC TCTACTTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45873305	mCV24655363	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss133508237	ENSMUSSNP3987113	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29879623					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108713003 () rs orientation: forward

Symbol	Name	Function Class
Rr636189	regulatory region 636189	within coordinates
Rr636190	regulatory region 636190	286 bp proximal