rs29879562 SNP Detail

Summary

• ID
  rs29879562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110563921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGAGTGTC TTCCTGTTCA GGCAACTGAT AGGGCCATTT
  GTGTTAACTA TGGGGTGACT TGGAGAGAGG AATTGGTACA TACTCCTTTT TAAAAAAAAA
  W
  TAGATTCTTC TTATATAAAG GAATGTAGTG AGGAAATCAG GATGATGAAA ATGTTCATGT
  TCTGTGCATG TCCTCTGGCA CTAGAATCCT CTTAGGCAT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46891142	NES10710012	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A		A	T		A
ss320873327	CHEV_3_110459523	CHEVERUD	SCREENING_POP	f	SNP						T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29879562					SNP	A	A	T	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891142	NES10710012	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110563921 () rs orientation: forward

Symbol	Name	Function Class
Rr583481	regulatory region 583481	898 bp proximal