rs29879386 SNP Detail

Summary

• ID
  rs29879386
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119543222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGCCCAGC TGTCTCCCTC CCAGCTGCTT ATCAGGACAG
  ACAGGCTCCA CCTGTGGCTC ACCACCACAG TAGCATTACT AGGAGCTCCA TGGGCTGGGG
  M
  TGGGGATGGG GGGCGGACAA CATCTCCCAC CTGACGTCAG GAAGCCGGAG TGAAAGCTGA
  GCCAACTGCG GGGAATGAAC ACGTTGGGAT AAGAAACTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45873797	mCV22718281	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	C	A
ss133591076	ENSMUSSNP1212359	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A		A
ss321928733	CHEV_6_119516279	CHEVERUD	SCREENING_POP	f	SNP						A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29879386					SNP	A	A	A	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119543222 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	within coordinates
Rr637715	regulatory region 637715	336 bp distal