rs29878550 SNP Detail

Summary

• ID
  rs29878550
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:110563657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTGCCA GCTCTTCCAT AACGTTGATG ACTCTAGACC
  TCTCTGTATC TTTCATATGC TCAAGATAAG TCTTCTATGT TGTTTTCCAT TCCATTTTTT
  W
  TTTTAGTTTC TGTAAATGTA AAAAAGGGAT GGGGCTTATG ACAGAGCCAA GTAAAGTACT
  GTAAGGGTGT AAGAGTTGGA AGTGGTCAAA GAAAATATTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46891130	NES10710007	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29878550					SNP	T	T	T	T	A	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46891130	NES10710007	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110563657 () rs orientation: forward

Symbol	Name	Function Class
Rr583481	regulatory region 583481	1162 bp proximal