rs29872828 SNP Detail

Summary

• ID
  rs29872828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119450377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACTGAAGA GTACTTAGAA ATGTTTCTGA GTTTAGTGCT
  TAATGGCTCC CCAACTTATT GTCTAAAGCT TAGTCCTTCA GGTTTTTGCT ATCTTCTCCT
  M
  TTCCTCCTCC CCCCCCCTTT TTTTTTAATG AAATAAAGTC TCATTATACT GCCTGGGCTA
  TCCTGGAAAA CAGTATATAG CTTTGAGTAG CCTGAAACT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45373131	mCV22554025	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147337191	ENSMUSSNP2892318	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29872828					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119450377 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			967 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			1427 bp upstream
Rr397233	regulatory region 397233			1140 bp downstream
Rr563550	regulatory region 563550			1588 bp distal
Rr563551	regulatory region 563551			1587 bp distal
Rr563552	regulatory region 563552			1169 bp distal
Rr563553	regulatory region 563553			66 bp proximal
Rr563554	regulatory region 563554			1034 bp proximal
Tssr19645	transcription start site region 19645			1159 bp downstream
Tssr25824	transcription start site region 25824			1386 bp upstream