rs29872578 SNP Detail

Summary

• ID
  rs29872578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86962390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA ACACAGCTCA CGGTTACAGC
  R
  ATGGTAGCTG GTTGTGTTTT ACAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss45870233	mCV22630375	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A		G
ss51746848	NES14796193	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G		G		G	A		G	A		G
ss133361068	ENSMUSSNP2578610	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss321848016	CHEV_6_86935402	CHEVERUD	SCREENING_POP	f	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs29872578					SNP	G	G	G	A	A	G	A	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51746848	NES14796193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86962390 () rs orientation: forward

Symbol	Name	Function Class
Aak1	AP2 associated kinase 1	Intron
Rr633566	regulatory region 633566	97 bp proximal