rs29872527 SNP Detail

Summary

• ID
  rs29872527
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8949656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCG GGTCAGTTCT ACCTACCCTT
  K
  CCCTGCCCGC ACCCCCCTCT CTCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45869929	mCV24757263	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss132976323	ENSMUSSNP2810723	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss321738444	CHEV_6_8899656	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29872527					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8949656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17155	CpG island 17155			237 bp distal
Cpgi17156	CpG island 17156			4 bp proximal
Cpgi17157	CpG island 17157			1398 bp proximal
Nxph1	neurexophilin 1			Intron
				Noncoding-Transcript-Variant
Rr626455	regulatory region 626455			1032 bp distal
Rr626456	regulatory region 626456			1006 bp distal
Rr626457	regulatory region 626457			within coordinates
Rr626458	regulatory region 626458			1919 bp proximal
Tssr54925	transcription start site region 54925			1218 bp downstream
Tssr54926	transcription start site region 54926			1054 bp downstream
Tssr54927	transcription start site region 54927			1037 bp downstream
Tssr54928	transcription start site region 54928			727 bp downstream
Tssr54929	transcription start site region 54929			693 bp downstream
Tssr54930	transcription start site region 54930			588 bp downstream
Tssr54931	transcription start site region 54931			14 bp upstream
Tssr54932	transcription start site region 54932			156 bp upstream