rs29871059 SNP Detail

Summary

• ID
  rs29871059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57519900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGCAGT CACTTTATTC
  TTTAGTTATA CTTTCCTCTG AGGTACTTAA GGCCACAGTG GTAGCTGAAA TTAATCACTT
  TTATTTAATT TCACTTTTTT TCTTTTTTTG CTGTCATGAC TTTTGCAGAT TTTGTTCTCA
  GGGGTTACTG AGAGGAACCT CTGTCTCTTC TCACCTTCCC TTTACCAGGT TCCTGTGTGC
  R
  AGGGTAATTC AAAGATCTTA AACCAAAGCT GCTTCACTTG AAATCATGGA AGTTTTCCTC
  TGTGTTGACG CTCCTCTTTG TAGACTGGAT ACTGGTCAGA ACTTACCAGG TGGTGTCTCC
  ATGGATTCCC TAAACAAGAG AAAAGATGAG TCCTCACAGT AATCATGTTT TTAGAGATGC
  CTCACGGGCC CTGGCACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45870922	mCV25134755	ABI	CRAMUS_MOUSE	f	SNP	A	G				G		G
ss51315069	NES13763371	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G		G	G	G	A	G	A	G
ss133241501	ENSMUSSNP4000160	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29871059					SNP	A	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315069	NES13763371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57519900 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr379418	regulatory region 379418	591 bp downstream
Rr631143	regulatory region 631143	1484 bp distal
Rr631144	regulatory region 631144	748 bp proximal
Rr631145	regulatory region 631145	1729 bp proximal
Tssr61161	transcription start site region 61161	1823 bp upstream