rs29869515 SNP Detail

Summary

• ID
  rs29869515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:147022882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT TCACTGCCCG TGATAAGCGC
  R
  CTGAATGGTG CGGGTGGGGG GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45371916	mCV22543577	ABI	CRAMUS_MOUSE	f	SNP		A	G	G
ss147881295	ENSMUSSNP2966265	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320548200	CHEV_2_147006698	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29869515					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147022882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12377	CpG island 12377			1868 bp distal
Cpgi12378	CpG island 12378			within coordinates
Nkx2-2	NK2 homeobox 2			Intron
				Noncoding-Transcript-Variant
Rr406682	regulatory region 406682			within coordinates
Rr566759	regulatory region 566759			1379 bp distal
Rr566762	regulatory region 566762			1985 bp distal
Rr566763	regulatory region 566763			within coordinates