rs29868719 SNP Detail

Summary

• ID
  rs29868719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89321772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGG ACTCATGGGG CGCGTCTGCC
  Y
  AGCTCAGCTG GGCCCAGGCA CAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45870890	mCV24907351	ABI	CRAMUS_MOUSE	f	SNP	C	C			T	C
ss48000011	NES11908788	PERLEGEN	MM_PANEL2	f	SNP		C	T	T				C	C	T
ss133371887	ENSMUSSNP6401893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss321851968	CHEV_6_89294784	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29868719					SNP	C	C	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000011	NES11908788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89321772 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	350 bp upstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	within coordinates