rs29868287 SNP Detail

Summary

• ID
  rs29868287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180087281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACAAGC AACAATACCA
  AAAGGAGAGA AATGAGGCTG CACTAAGTTA AAAGGCTCCC ATGTCGGGAA GGAATTTATC
  AACAGAGTGA AGGAACAACC TGCTGGGACC AGGAGAAACT ATCTGGGAGC TATGCTGACA
  AGCTGCTATC TGGCATAGCA AGGAGGTCGA GCAAGGCCCC AGCAGTGAAA TAAACAACCC
  Y
  AGTGAGAATG GGGAAGGACC TCTGTGGACA GTTCCCAGAA GAAAACACAG CCGAGCAAGG
  GGGGGGGGGG GGCGGGGGGA TGATAAAAGA CTCACCAAGG AAATGCAAAC CCAAACTGGC
  AACTTGCCCA CACCTGCTAG AGCAGTAACA ATGAAAAGAC ACAGAAAACA AGTGTTGGCA
  AGGACGGGGA CAAAAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45371655	mCV22939285	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148391778	ENSMUSSNP3811293	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320632141	CHEV_2_180180193	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29868287					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180087281 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	1475 bp downstream
Rr572757	regulatory region 572757	within coordinates
Tssr22239	transcription start site region 22239	1435 bp downstream
Tssr28110	transcription start site region 28110	1654 bp upstream
Tssr28111	transcription start site region 28111	1555 bp upstream