rs29865911 SNP Detail

Summary

• ID
  rs29865911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32389548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC AGCTGGGATG CTTGACAGAG
  K
  AGCCTGGCAT ACCCAATAAG GCATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45419068	mCV24754893	ABI	CRAMUS_MOUSE	f	SNP		G	G				T		G
ss49576707	NES12857763	PERLEGEN	MM_PANEL2	f	SNP	G			G	T	G		G	G	G		G	G	G	G		G
ss134747986	ENSMUSSNP1048039	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320697628	CHEV_3_32234321	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29865911					SNP	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576707	NES12857763	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32389548 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	1446 bp distal
Rr574941	regulatory region 574941	1773 bp distal
Rr574942	regulatory region 574942	within coordinates
Zmat3	zinc finger matrin type 3	mRNA-UTR