rs29865907 SNP Detail

Summary

• ID
  rs29865907
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32390005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTATGGA GTCATTTCTT
  AAAACCAACA AAAAAAGCAT CAGGTAGAGA GTGCATGAGA GGGGTCAGTG ATGGAGAACA
  CCATTTTCAC GAAGGGGTGG GGGGAGGGGG GGTCACGTGA CCACTTACGT AGCCAGAGTG
  GTCATAAAAG CCATTTAAAG ACAAAAACAA TCAGACAGAC CCTGCATGAG TTGGTGCTCA
  W
  CAGTGCAGTG AGATTTTAGC AATTGCTTTG GACTCAATTA GAACTACAAT TTATATAGCT
  TGGCATGGTG GTACATGCCT GTAATCCCAG CACCAGGAGG TGGAGGCAGG AGGATCGGGG
  GAGTTCAAGG TCAGCCTTGG CTACATAGTA GAAGTGACTC ACCTGAGCTA CATGGAACAT
  CACAAAAACA ACAAATACCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576703	NES12857773	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29865907					SNP	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576703	NES12857773	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32390005 () rs orientation: forward

Symbol	Name	Function Class
Rr574940	regulatory region 574940	1903 bp distal
Rr574942	regulatory region 574942	394 bp distal
Zmat3	zinc finger matrin type 3	mRNA-UTR