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rs29865712 SNP Detail
Summary
  • ID
    rs29865712
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:32321645 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCCTGACTA GCTCCTAACT
    CATTTATCCA TGTTTTCTTT TCTATGAGTG CCTCATGGCT GGCTCTCTCT TCTCAGTTCT
    CATGCAACAA TCTTCCTCAG AGCTCTGGGG TGAATCCTTT TTCATGTCTG ACTCTATGCC
    AGAAACACTC TCTGCATCAG AACTTCCATC TCTCTATTTC CTGCCTATAC TCATAGGCCA
    W
    CAGCCTTTTA TTGACAGGTG AAGCTACCAC ACATTGCATA AAAGATTCCC TCTACAGTAT
    CAAGGACTGC AGGCTCACAG CCTAAGAAGA GGGACACAGA GGTTTCTGTT ATAATCCCTA
    TCCCACCCCA CCACACCCCC AAAATGTAAC AGCCTAGATA GAAGGCCACC AAAGAGAATG
    CTTAAAAATT GTAATAAAGA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss49577109 NES12861748 PERLEGEN MM_PANEL2 f SNP T T T T T T A T A T
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs29865712 SNP T T T T T T A T A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49577109 NES12861748 PERLEGEN MM_PANEL f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:32321645 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42201 predicted gene, 42201 within coordinates
Rr574936 regulatory region 574936 1355 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory