rs29865520 SNP Detail

Summary

• ID
  rs29865520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTGCTT TCTTACAGAA
  CCCAGGACCA CAAGCCTCAG ATGGCACCAG ACTGGGCCCT CCCCCATCAA TCACTAATTA
  GAAAAATATC CTGCAGGCCT TGCCTACACC TTGATCTTAT GGAGGCATTT TCTTGATTGA
  GGTTCCCTCC TCTCCGATAA CTTTGGCCTG TGTCTGTCTA ACCAGAACAG TAGTCAATGC
  R
  TGGGGGAGGG GGTAACATAG TAGAAAGGAG AACCAGGTTT GATAAGAGTT GGGATTTTTA
  TGTTTTATCT GGAAGTTGTG GACCTGGGTG AGCCTCTGCA GTCCTACCAG GTGAATTTAA
  CCTGTAAAGG GTCCTCTGAA GGGGAGATGG TCAGGAATGT CTGTTACCCG CTTGAGCTGG
  GTGTGATGAA TCCAGGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39125798	mCV25044076	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss149030175	ENSMUSSNP6564907	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29865520					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622264 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1430 bp upstream
Rr480226	regulatory region 480226	1972 bp distal
Rr480227	regulatory region 480227	1119 bp proximal
Rr480228	regulatory region 480228	1217 bp proximal
Rr480229	regulatory region 480229	1837 bp proximal