rs29865318 SNP Detail

Summary

• ID
  rs29865318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84217916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAAAATA CAACTTGTTT GTAAACACTT AAACAACCTA
  AAAGAGGAAG AAAAATTAGG TGCTATTTTT AGACCCCGCA CCTTGAGGCC AAATGAGGAT
  R
  TGCTCTTAAA CCCAGGAAGT GAAGACCAGC CTGGAAAATA CGTCTTCAAT AAAGAAATGG
  ACGCAATTCT CCAGAACTGG TTTTAAGGTA CTTGGTACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45371131	mCV24735362	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss146830333	ENSMUSSNP5476516	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320371275	CHEV_2_84227729	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29865318					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84217916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560244	regulatory region 560244			1979 bp distal
Rr560245	regulatory region 560245			within coordinates
Rr560246	regulatory region 560246			5 bp proximal
Rr560247	regulatory region 560247			513 bp proximal
Tssr24971	transcription start site region 24971			380 bp upstream