rs29865001 SNP Detail

Summary

• ID
  rs29865001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32390627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGGCG GGCAGAGGAT
  GGAGGCAGAC CGCAGTTCTC TCCGACATGA CTGGAGGGAG GCTGTAGACT GCCTAAGGCT
  TGCCCAGCCC TCAGTAGACA GTACTGTTGT CTCAGAGTTT AATCCTGCTA TGTACAGGCA
  TAGGAGGCGA GTGGTTACAG CGCCTGGGAG TTCACAGCAA GTCCTGTCGG GAACGTAACG
  Y
  TTGTGGGCCA CGTAACCTGG TACGGACTTG TTGGAAACCC TAAGCACACT CAAGAACAGA
  AACAAGGAAG ACTGCTATCC ACAGGAGAGT ACAGAGACTG CTTACTGCCT CAGGTTATGA
  CCTACACATG CTGTCTTCCT AAGACATTAA CATGTGAATA TTAAATCCTA GTGTATGACA
  CCCATGGTAG GGACGCTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576697	NES12857528	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29865001					SNP	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576697	NES12857528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32390627 () rs orientation: forward

Symbol	Name	Function Class
Rr574942	regulatory region 574942	1016 bp distal
Zmat3	zinc finger matrin type 3	mRNA-UTR