rs29865000 SNP Detail

Summary

• ID
  rs29865000
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32390648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGACC GCAGTTCTCT
  CCGACATGAC TGGAGGGAGG CTGTAGACTG CCTAAGGCTT GCCCAGCCCT CAGTAGACAG
  TACTGTTGTC TCAGAGTTTA ATCCTGCTAT GTACAGGCAT AGGAGGCGAG TGGTTACAGC
  GCCTGGGAGT TCACAGCAAG TCCTGTCGGG AACGTAACGT TTGTGGGCCA CGTAACCTGG
  W
  ACGGACTTGT TGGAAACCCT AAGCACACTC AAGAACAGAA ACAAGGAAGA CTGCTATCCA
  CAGGAGAGTA CAGAGACTGC TTACTGCCTC AGGTTATGAC CTACACATGC TGTCTTCCTA
  AGACATTAAC ATGTGAATAT TAAATCCTAG TGTATGACAC CCATGGTAGG GACGCTGTCT
  GAAATGTATA GAGCCATCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49576696	NES12857529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29865000					SNP	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576696	NES12857529	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32390648 () rs orientation: forward

Symbol	Name	Function Class
Rr574942	regulatory region 574942	1037 bp distal
Zmat3	zinc finger matrin type 3	mRNA-UTR