rs29864998 SNP Detail

Summary

• ID
  rs29864998
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32390717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTAGACA GTACTGTTGT
  CTCAGAGTTT AATCCTGCTA TGTACAGGCA TAGGAGGCGA GTGGTTACAG CGCCTGGGAG
  TTCACAGCAA GTCCTGTCGG GAACGTAACG TTTGTGGGCC ACGTAACCTG GTACGGACTT
  GTTGGAAACC CTAAGCACAC TCAAGAACAG AAACAAGGAA GACTGCTATC CACAGGAGAG
  K
  ACAGAGACTG CTTACTGCCT CAGGTTATGA CCTACACATG CTGTCTTCCT AAGACATTAA
  CATGTGAATA TTAAATCCTA GTGTATGACA CCCATGGTAG GGACGCTGTC TGAAATGTAT
  AGAGCCATCT GTCCTGATGG GCAGACAGAA GAACACAGCG ATGGGCTCAT GGGAGTCGTG
  AGGAAACCCG AGTAGGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576694	NES12857531	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29864998					SNP	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576694	NES12857531	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32390717 () rs orientation: forward

Symbol	Name	Function Class
Rr574942	regulatory region 574942	1106 bp distal
Zmat3	zinc finger matrin type 3	mRNA-UTR