rs29864956 SNP Detail

Summary

• ID
  rs29864956
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32465795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATCACAC GCAGGAGACT
  TGTTTAAACC CCAGAGGGAG GGGGAAGTGA GCATCAGGGG CAGTGGTCAG TGTCTTTACT
  TTGAAGTCAA CAGCAGTGTG TTTCTAAGGC TTTTGCTGGG GAGAAGCTTT CTGCCTCTCT
  AATTCTGCTG TTGGAATACA AGTGGGCGAT TTTTAGACTT TTAAAATCAA TAGGTTTTTT
  W
  AAAATTTTTT TATTTTAATT AACAGTTTTA ACCCAGTAAT TTTCACTTGC AGCACCTGTA
  TATTGTCATT TGTAATACCT TAAGTATTTA ACAAGTATAC TATGTTCTAT ATCCTATAGA
  AATAAGTAGT TATATAAACT TTTATCTGGT AGACTGTGCA AAGTCAGGGT TTGAGTTTTA
  TCACTGTCTG AATGCATGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576392	NES12852356	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29864956					SNP	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576392	NES12852356	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32465795 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr574959	regulatory region 574959			911 bp proximal