rs29863343 SNP Detail

Summary

• ID
  rs29863343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32417932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TTTTTTTTGG TCAACAGAAT
  K
  CGGTGTCTTC GGCTACTGAG CTTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss49576489	NES12855378	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	T	G	G	G	T		G		T
ss134748738	ENSMUSSNP4326422	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss320697906	CHEV_3_32262705	CHEVERUD	SCREENING_POP	f	SNP										T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs29863343					SNP	G	G	G	G	T	G	G	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576489	NES12855378	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32417932 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	1706 bp upstream
Cpgi13055	CpG island 13055	1161 bp proximal
Rr374783	regulatory region 374783	within coordinates
Rr574945	regulatory region 574945	450 bp proximal
Rr574946	regulatory region 574946	868 bp proximal
Rr574947	regulatory region 574947	1685 bp proximal
Rr574948	regulatory region 574948	1885 bp proximal
Rr574949	regulatory region 574949	1886 bp proximal
Tssr28742	transcription start site region 28742	609 bp upstream
Tssr28743	transcription start site region 28743	1128 bp upstream
Tssr28744	transcription start site region 28744	1523 bp upstream
Tssr28745	transcription start site region 28745	1553 bp upstream
Tssr32923	transcription start site region 32923	1361 bp downstream
Tssr32924	transcription start site region 32924	1400 bp downstream
Tssr32925	transcription start site region 32925	1640 bp downstream
Tssr32926	transcription start site region 32926	1825 bp downstream
Tssr32927	transcription start site region 32927	1860 bp downstream
Zmat3	zinc finger matrin type 3	Intron