rs29863280 SNP Detail

Summary

• ID
  rs29863280
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102388255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGCTTC GTTCTCATAT
  TTCCAACATA TCCTTGTCTT ACCTGAGTTT AAAGGAAGAT GTAGCTGTCA GCAAAGTATC
  TGTGTTCAGG TCTTCTTGGC CTGGCTTTCT GCCACTAGGG TGTGTACGGT TCTTTTCCAA
  ATGGTGCCTA GAATCTCTTC TGGGAAAGCT TGGCTCCCTT GGCTCATGTG TCAGAACATA
  W
  TACTAAGTGT CACAAGCCTT ATAGAAATGC GACACAAACT TCAATAGACA AAAATGTTCA
  GATTGGTGAC TGTGATGGAT CACTAGACTC CACAATAAAG TTGGAATTAT AGCAAGAGAA
  GAGTCTAGCA TTTGTCTTTG TCACAAATAG CCTTCACTTG AGGAATTATT CCTGCCTCTT
  ATGTTCATAT TCATGTATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45369761	mCV23730701	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss147115639	ENSMUSSNP2177417	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320438849	CHEV_2_102398067	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29863280					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102388255 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1028 bp proximal