rs29860139 SNP Detail

Summary

• ID
  rs29860139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127969376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGGAGCTG CGGTGGCCGG CACAGTCTGA GCGGCGCTGG
  GCGGCGAGTT TGTCAACAAT CGCCTTGCCT TCGGCTGCCT GACCCGTAGG CGCCGCCCCC
  R
  CCGCCTCTGC CCATTGGTTA CGATGGGGAG CGACTGCGCG CGGGCCAATG GGGGAGCACT
  GGCAGCCGGC GCCAGGGGCG CAGGGCTGGC GGTGCCCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45369802	mCV22674640	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29860139					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127969376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Cpgi12235	CpG island 12235			within coordinates
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			1293 bp upstream
Gm75596	predicted gene, 75596			429 bp downstream
Rr397296	regulatory region 397296			within coordinates
Rr564651	regulatory region 564651			1396 bp distal
Rr564652	regulatory region 564652			1229 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			557 bp proximal
Rr564655	regulatory region 564655			566 bp proximal
Tssr20042	transcription start site region 20042			1400 bp downstream
Tssr20043	transcription start site region 20043			102 bp upstream
Tssr20044	transcription start site region 20044			131 bp upstream
Tssr20045	transcription start site region 20045			655 bp upstream
Tssr20046	transcription start site region 20046			669 bp upstream
Tssr20047	transcription start site region 20047			1261 bp upstream
Tssr26150	transcription start site region 26150			44 bp upstream
Tssr26151	transcription start site region 26151			568 bp downstream