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rs29860096 SNP Detail
Summary
  • ID
    rs29860096
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:32320772 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAAACCATTC AAGGGCTTCT
    GAGGGTCTTA CATCCCTGCT ATAACAGAAA CCCTTTAAGA ATAGGGGTCC TTCTTGGTTC
    GTAGATGGTC ATCTTCAGCT GATGAATCTT TCTTTCTTCT GTATTTACAT TTTTAATTAT
    TTTTAATTAT CAACTTGATA CAAGTTACTT GGTTAGAGTG ACTCTTAGCT GAGAAAAAGC
    Y
    TCCATATCGT TTGCCTGTAC TATGTGGATG TCCTACAGCA GCTTGGAGCC GTGTTGATGT
    CCCTGGCCTG AGGAACCTGT AGGCCATATA AAATATCTTT AGTCTGGGCC ACTACCTGAG
    GCCATAATGA TGTTTAGGCC CATGCTACTG CTGGGGTCAT ACTGATGTGA GTAGCCTGCT
    CTGCCACCAA AGATCATGTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss49577122 NES12861735 PERLEGEN MM_PANEL2 f SNP T T T T T T T C T C T
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs29860096 SNP T T T T T T T C T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49577122 NES12861735 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:32320772 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42201 predicted gene, 42201 within coordinates
Rr574936 regulatory region 574936 482 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory