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rs29860095 SNP Detail
Summary
  • ID
    rs29860095
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:32320808 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTATAACA GAAACCCTTT
    AAGAATAGGG GTCCTTCTTG GTTCGTAGAT GGTCATCTTC AGCTGATGAA TCTTTCTTTC
    TTCTGTATTT ACATTTTTAA TTATTTTTAA TTATCAACTT GATACAAGTT ACTTGGTTAG
    AGTGACTCTT AGCTGAGAAA AAGCTTCCAT ATCGTTTGCC TGTACTATGT GGATGTCCTA
    S
    AGCAGCTTGG AGCCGTGTTG ATGTCCCTGG CCTGAGGAAC CTGTAGGCCA TATAAAATAT
    CTTTAGTCTG GGCCACTACC TGAGGCCATA ATGATGTTTA GGCCCATGCT ACTGCTGGGG
    TCATACTGAT GTGAGTAGCC TGCTCTGCCA CCAAAGATCA TGTGATGTCT GAGCTCATGC
    TGCCACCATG TCTCTAGCTT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss49577121 NES12861736 PERLEGEN MM_PANEL2 f SNP C C C C C C C C G C G C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs29860095 SNP C C C C C C C C G C G C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49577121 NES12861736 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:32320808 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm42201 predicted gene, 42201 within coordinates
Rr574936 regulatory region 574936 518 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory