rs29860094 SNP Detail

Summary

• ID
  rs29860094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32320870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGAATC TTTCTTTCTT
  CTGTATTTAC ATTTTTAATT ATTTTTAATT ATCAACTTGA TACAAGTTAC TTGGTTAGAG
  TGACTCTTAG CTGAGAAAAA GCTTCCATAT CGTTTGCCTG TACTATGTGG ATGTCCTACA
  GCAGCTTGGA GCCGTGTTGA TGTCCCTGGC CTGAGGAACC TGTAGGCCAT ATAAAATATC
  Y
  TTAGTCTGGG CCACTACCTG AGGCCATAAT GATGTTTAGG CCCATGCTAC TGCTGGGGTC
  ATACTGATGT GAGTAGCCTG CTCTGCCACC AAAGATCATG TGATGTCTGA GCTCATGCTG
  CCACCATGTC TCTAGCTTAA GGTGCCACTT AAGTCCATAC AGATGCCTTT GGTCGGAGCT
  GCAGTCTGAA GCCATGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49577120	NES12861737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29860094					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49577120	NES12861737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32320870 () rs orientation: forward

Symbol	Name	Function Class
Gm42201	predicted gene, 42201	within coordinates
Rr574936	regulatory region 574936	580 bp distal