rs29858902 SNP Detail

Summary

• ID
  rs29858902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32582627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCT TGTTTTTTTA ACTCATCCAT
  Y
  TTAGCACTGT CCTTCCTATG TGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45518857	mCV22804974	ABI	CRAMUS_MOUSE	f	SNP	C	C			T
ss49576038	NES12884661	PERLEGEN	MM_PANEL2	f	SNP		C	T	C		T	C		C		T
ss134750138	ENSMUSSNP2839125	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320698375	CHEV_3_32427400	CHEVERUD	SCREENING_POP	f	SNP								C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs29858902					SNP	C	C	T	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576038	NES12884661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32582627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	849 bp proximal
Gm66043	predicted gene, 66043	211 bp downstream
Mfn1	mitofusin 1	987 bp upstream
Rr374786	regulatory region 374786	1569 bp downstream
Rr397636	regulatory region 397636	774 bp upstream
Rr574980	regulatory region 574980	915 bp distal
Rr574981	regulatory region 574981	497 bp proximal
Rr574982	regulatory region 574982	998 bp proximal
Rr574983	regulatory region 574983	1103 bp proximal
Tssr28756	transcription start site region 28756	974 bp upstream
Tssr28757	transcription start site region 28757	1054 bp upstream
Tssr28758	transcription start site region 28758	1079 bp upstream
Tssr28759	transcription start site region 28759	1101 bp upstream
Tssr28760	transcription start site region 28760	1160 bp upstream